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$532+ Cheap flights from San Juan to Tokyo (TYO)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 4/28. Fares are subject to change and may not be available on all flights or dates of travel.
SJU — TYO
Apr 27 — May 41
Sun 4/27
Sun 5/4
1 adult, Economy
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Cheapflights Tip: The best prices from San Juan to Tokyo are usually found in November or October, booked 58 days in advance, depart on a Tuesday or Wednesday and return on a Monday

Cheap flight deals from San Juan to Tokyo

Discover tips and strategies to find the most affordable flight options for your journey from San Juan (PR1) to Tokyo (TYO). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated April 22, 2025.

Round-trip from

$1,036
(Kiwi.com)

One-way from

$532
(Kiwi.com)

Popular in

June

Cheapest in

November

Average price

$1,727
From San Juan to Tokyo (TYO)
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One-way flight from San Juan to Tokyo (TYO)
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Highest demand for flights based on searches. 8% potential increase in price ($155 potential increase over avg. RT price).
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Cheapest flight prices on average. 1% potential price decrease ($21 potential savings vs. average RT price).
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Average for round-trip flights in April 2025
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Find flight deals from San Juan to Tokyo

Cheapest flights from San Juan to Tokyo
Explore the most affordable flight options available from San Juan to Tokyo. Find the lowest fares from popular airlines and budget airlines, with prices last updated on April 22, 2025.

This Kiwi.com deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Kiwi.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 5/48:45 pmSJU - NRT
1 stop28h 35mMultiple Airlines
Wed 5/2110:30 amNRT - SJU
2 stops25h 08mMultiple Airlines
Deal found 4/22$1,036
This Air Canada deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Air Canada is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Mon 9/221:05 amSJU - NRT
2 stops25h 20mAir Canada
Tue 9/304:40 pmNRT - SJU
2 stops32h 20mAir Canada
Deal found 4/22$1,267
This Air Canada deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Air Canada is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 10/231:05 amSJU - HND
2 stops25h 45mAir Canada
Sat 11/86:50 pmHND - SJU
1 stop33h 00mAir Canada
Deal found 4/22$1,283
This FlightHub deal was found by Cheapflights users on 4/21. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 6/118:25 pmSJU - NRT
2 stops51h 30mQatar Airways
Sat 6/2810:25 pmNRT - SJU
2 stops33h 05mQatar Airways
Deal found 4/21$1,375
This FlightHub deal was found by Cheapflights users on 4/21. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 6/118:25 pmSJU - HND
2 stops38h 30mQatar Airways
Sat 6/2810:50 pmHND - SJU
2 stops32h 40mQatar Airways
Deal found 4/21$1,411
This United Airlines deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 10/261:25 pmSJU - HND
2 stops38h 05mUnited Airlines
Wed 11/1912:50 amHND - SJU
2 stops24h 59mUnited Airlines
Deal found 4/22$1,417
This United Airlines deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure United Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 9/123:56 pmSJU - NRT
2 stops57h 19mUnited Airlines
Fri 9/265:00 pmNRT - SJU
2 stops32h 00mUnited Airlines
Deal found 4/22$1,418
This FlightHub deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 11/197:30 amSJU - HND
1 stop20h 45mJapan Airlines
Tue 12/97:45 pmHND - SJU
1 stop20h 00mJapan Airlines
Deal found 4/22$1,420
This FlightHub deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 11/196:15 amSJU - NRT
1 stop21h 00mJapan Airlines
Wed 12/106:30 pmNRT - SJU
1 stop21h 47mJapan Airlines
Deal found 4/22$1,422
This Delta deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Delta is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 9/712:56 pmSJU - HND
2 stops35h 09mDelta
Fri 9/194:35 pmHND - SJU
1 stop18h 33mDelta
Deal found 4/22$1,432
This ANA deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure ANA is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Tue 9/301:05 amSJU - HND
1 stop23h 30mMultiple Airlines
Tue 10/1412:30 amHND - SJU
2 stops30h 00mMultiple Airlines
Deal found 4/22$1,442
This American Airlines deal was found by Cheapflights users on 4/22. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure American Airlines is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sun 11/94:35 pmSJU - NRT
1 stop33h 55mAmerican Airlines
Fri 11/215:30 pmNRT - SJU
1 stop24h 35mAmerican Airlines
Deal found 4/22$1,473

Cheapflights Fare Finder

Customize your flight search to find flights from San Juan to Tokyo that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated April 22, 2025.
Use the filters below to find and compare flights from San Juan to Tokyo that are best for you.

Fly from

San Juan

Fly to

Tokyo

Route

Depart

Return

Price

San JuanTokyo

SJU - NRT

SJUNRT

San Juan Luis Munoz Marin Intl

Sun 5/4

8:45 pm-2:20 pm

1 stop28h 35m

Tokyo Narita

Wed 5/21

10:30 am-10:38 pm

2 stops25h 08m

$1,036

San JuanTokyo

SJU - NRT

SJUNRT

San Juan Luis Munoz Marin Intl

Mon 9/22

1:05 am-3:25 pm

2 stops25h 20m

Tokyo Narita

Tue 9/30

4:40 pm-12:00 pm

2 stops32h 20m

$1,267

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Mon 9/22

1:05 am-3:50 pm

2 stops25h 45m

Tokyo Haneda

Tue 9/30

6:10 pm-12:00 pm

2 stops30h 50m

$1,293

San JuanTokyo

SJU - NRT

SJUNRT

San Juan Luis Munoz Marin Intl

Wed 6/11

8:25 pm-12:55 pm

2 stops51h 30m

Tokyo Narita

Sat 6/28

10:25 pm-6:30 pm

2 stops33h 05m

$1,375

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Wed 6/11

8:25 pm-11:55 pm

2 stops38h 30m

Tokyo Haneda

Sat 6/28

10:50 pm-6:30 pm

2 stops32h 40m

$1,411

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Sat 8/30

2:00 pm-3:15 pm

2 stops36h 15m

Tokyo Haneda

Wed 9/10

5:45 pm-11:57 pm

1 stop19h 12m

$1,417

San JuanTokyo

SJU - NRT

SJUNRT

San Juan Luis Munoz Marin Intl

Fri 9/12

3:56 pm-2:15 pm

2 stops57h 19m

Tokyo Narita

Fri 9/26

5:15 pm-11:57 pm

1 stop19h 42m

$1,418

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Wed 9/17

6:00 am-4:40 pm

1 stop21h 40m

Tokyo Haneda

Wed 10/1

6:30 pm-1:45 am

1 stop20h 15m

$1,420

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Sun 9/7

12:56 pm-1:05 pm

2 stops35h 09m

Tokyo Haneda

Fri 9/19

4:35 pm-10:08 pm

1 stop18h 33m

$1,432

San JuanTokyo

SJU - HND

SJUHND

San Juan Luis Munoz Marin Intl

Tue 9/30

1:05 am-1:35 pm

1 stop23h 30m

Tokyo Haneda

Tue 10/14

12:30 am-5:30 pm

2 stops30h 00m

$1,442

Flights are sorted by cheapest round-trip flights first.

Deals found on 4/21

Showing 1-10 of 29 results
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Best time to book a flight from San Juan to Tokyo

Have a flexible travel schedule? Discover the best time to fly to Tokyo from San Juan with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from San Juan to Tokyo

How far ahead should I book a flight from San Juan to Tokyo?

Use this chart to determine the optimal time to book a round-trip flight from San Juan to Tokyo. Price data was last updated on April 18, 2025.

Booking 58 days in advance of your planned departure date is, on average, the best time to get cheap flights from San Juan to Tokyo. The general trend is that the closer you book to the departure date, the more expensive your flight will be.

What is the cheapest month to book a flight from San Juan to Tokyo?

Currently, February is the cheapest month in which you can book a flight from San Juan to Tokyo (average of $846). Flying from San Juan to Tokyo in June is currently the most expensive (average of $1,218). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

What is the cheapest time of day to fly from SJU to TYO?

Find hourly flight availability from San Juan to Tokyo. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated April 22, 2025.

It’s optimal to fly from San Juan to Tokyo in the evening. By choosing this option you can save up to 17% on the cost of your flight, compared to a flight in the morning.

Rainfall in Tokyo by month

Plan your trip to Tokyo by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Tokyo ranges from 2.0 - 8.3 inches per month. September is typically the wettest month, when rainfall can reach 8.3 in. January is typically the driest time to visit Tokyo when rainfall is around 2.0 in.

Temperature in Tokyo by month

Plan your trip to Tokyo by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Tokyo, use this chart to help with planning. For those seeking warmer temperatures, August is the ideal time of year to visit, when temperatures reach an average of 80.6 F. Travelers looking to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 42.8 F).

Reviews of airlines servicing Tokyo

Get insights into the airlines that provide service to Tokyo. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Tokyo. Reviews last updated April 22, 2025.
To help decide which airline to fly from San Juan to Tokyo, see what other customers have to say about Japan Airlines, Delta and Qatar Airways. You can also see how each airline stacks up in terms of entertainment options, comfort, food, crew/service, and boarding process.
Japan Airlines
8.3
Very good
1,450 reviews

Entertainment

7.8

Boarding

8.4

Comfort

8.2

Crew

8.7

Food

7.7

Overall

8.3

Reviews

1 / 20
8.0
Excellent

Diego,Nov 2024

HKG - NRT

overall very good; just found a bit poor the food options in Narita airport but the in the flight it was good but limited (no real choice to avoid seafood or clearly stay away from pork..); most of the food was tasty tho and the choice was nice, specially their snacks and dessert and drinks. The in-flight systems was so-so (too complicated interface; they should rehaul with a proper UIX), and I specially appreciated their segments of videos capsules about the behind the scenes including an overview of technicalities of their aircraft and days in the life of their pilots. It was refreshing and give a good ideas of the efforts and challenges every employees has to deal with. Loved it!
Japan Airlines
8.3
Very good
1,450 reviews
Japan Airlines
8.3
Very good
1,450 reviews

Entertainment

7.8

Boarding

8.4

Comfort

8.2

Crew

8.7

Food

7.7

Overall

8.3

Reviews

1 / 20
8.0
Excellent

Diego,Nov 2024

HKG - NRT

overall very good; just found a bit poor the food options in Narita airport but the in the flight it was good but limited (no real choice to avoid seafood or clearly stay away from pork..); most of the food was tasty tho and the choice was nice, specially their snacks and dessert and drinks. The in-flight systems was so-so (too complicated interface; they should rehaul with a proper UIX), and I specially appreciated their segments of videos capsules about the behind the scenes including an overview of technicalities of their aircraft and days in the life of their pilots. It was refreshing and give a good ideas of the efforts and challenges every employees has to deal with. Loved it!
Delta
8.0
Very good
7,920 reviews
Japan Airlines
8.3
Very good
1,450 reviews

Entertainment

7.8

Boarding

8.4

Comfort

8.2

Crew

8.7

Food

7.7

Overall

8.3

Reviews

1 / 20
8.0
Excellent

Diego,Nov 2024

HKG - NRT

overall very good; just found a bit poor the food options in Narita airport but the in the flight it was good but limited (no real choice to avoid seafood or clearly stay away from pork..); most of the food was tasty tho and the choice was nice, specially their snacks and dessert and drinks. The in-flight systems was so-so (too complicated interface; they should rehaul with a proper UIX), and I specially appreciated their segments of videos capsules about the behind the scenes including an overview of technicalities of their aircraft and days in the life of their pilots. It was refreshing and give a good ideas of the efforts and challenges every employees has to deal with. Loved it!
Qatar Airways
7.4
Good
3,560 reviews
Japan Airlines
8.3
Very good
1,450 reviews

Entertainment

7.8

Boarding

8.4

Comfort

8.2

Crew

8.7

Food

7.7

Overall

8.3

Reviews

1 / 20
8.0
Excellent

Diego,Nov 2024

HKG - NRT

overall very good; just found a bit poor the food options in Narita airport but the in the flight it was good but limited (no real choice to avoid seafood or clearly stay away from pork..); most of the food was tasty tho and the choice was nice, specially their snacks and dessert and drinks. The in-flight systems was so-so (too complicated interface; they should rehaul with a proper UIX), and I specially appreciated their segments of videos capsules about the behind the scenes including an overview of technicalities of their aircraft and days in the life of their pilots. It was refreshing and give a good ideas of the efforts and challenges every employees has to deal with. Loved it!
Etihad Airways
7.4
Good
1,202 reviews
Japan Airlines
8.3
Very good
1,450 reviews

Entertainment

7.8

Boarding

8.4

Comfort

8.2

Crew

8.7

Food

7.7

Overall

8.3

Reviews

1 / 20
8.0
Excellent

Diego,Nov 2024

HKG - NRT

overall very good; just found a bit poor the food options in Narita airport but the in the flight it was good but limited (no real choice to avoid seafood or clearly stay away from pork..); most of the food was tasty tho and the choice was nice, specially their snacks and dessert and drinks. The in-flight systems was so-so (too complicated interface; they should rehaul with a proper UIX), and I specially appreciated their segments of videos capsules about the behind the scenes including an overview of technicalities of their aircraft and days in the life of their pilots. It was refreshing and give a good ideas of the efforts and challenges every employees has to deal with. Loved it!
United Airlines
7.4
Good
8,683 reviews
Japan Airlines
8.3
Very good
1,450 reviews

Entertainment

7.8

Boarding

8.4

Comfort

8.2

Crew

8.7

Food

7.7

Overall

8.3

Reviews

1 / 20
8.0
Excellent

Diego,Nov 2024

HKG - NRT

overall very good; just found a bit poor the food options in Narita airport but the in the flight it was good but limited (no real choice to avoid seafood or clearly stay away from pork..); most of the food was tasty tho and the choice was nice, specially their snacks and dessert and drinks. The in-flight systems was so-so (too complicated interface; they should rehaul with a proper UIX), and I specially appreciated their segments of videos capsules about the behind the scenes including an overview of technicalities of their aircraft and days in the life of their pilots. It was refreshing and give a good ideas of the efforts and challenges every employees has to deal with. Loved it!

Related info for your journey

Find useful and relevant information for your journey from San Juan to Tokyo. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • What are the cheapest airlines flying from San Juan to Tokyo round-trip?

    According to our current data, Air Canada ($1,267), Qatar Airways ($1,375), and United Airlines ($1,417) offers the cheapest pricing from San Juan to Tokyo. Users have found that Air Canada is 25% cheaper than the other options available to this destination.

  • What are the cheapest airlines to fly from San Juan to Tokyo one-way?

    $756 is the cheapest one-way deal found within the past few days, from Etihad Airways. You may also be able to find cheap deals on United Airlines and Japan Airlines, with prices starting from $854 and $938, respectively.

  • Can I find deals for flights from San Juan to Tokyo that include hotel bookings?

    Yes. In addition to deals on San Juan to Tokyo flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from San Juan to Tokyo?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from San Juan to Tokyo.

  • Can I find deals for business class flights from San Juan to Tokyo?

    Yes. Cheapflights offers flight deals from San Juan to Tokyo by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

  • What is the cheapest month to book a flight from San Juan to Tokyo?

    Currently, February is the cheapest month in which you can book a flight from San Juan to Tokyo (average of $846). Flying from San Juan to Tokyo in June is currently the most expensive (average of $1,218). There are several factors that can impact the price of a flight, so comparing airlines, departure airports and flight times can provide users with more options.

See more FAQs

Traveling to a place near San Juan?

Book flights to San Juan if you plan to visit one of these locations
Saitama
Urayasu
Numazu
Chiba
Hakone
Kawasaki
Odawara
Yamanouchi
Atami
Yamanashi
Sagamihara

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Alternative routes for San Juan to Tokyo

See prices for flight routes from nearby airports that may be better suited for you.
Luis Munoz Marin Intl to Narita flights
Luis Munoz Marin Intl to Haneda flights

Top 5 airlines flying from San Juan to Tokyo

Discover the top 5 airlines that operate flights from San Juan to Tokyo. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated April 22, 2025.
AirlineCheapestAverageFlexibilityOn-time
Air CanadaCheapest$1,107Average$1,183FlexibilityNo cancel feeOn-time67%
Qatar AirwaysCheapest$1,330Average$1,336FlexibilityNo cancel feeOn-time68%
United AirlinesCheapest$1,354Average$1,659FlexibilityNo cancel feeOn-time69%
American AirlinesCheapest$1,356Average$1,780FlexibilityNo cancel feeOn-time71%
Japan AirlinesCheapest$1,395Average$1,759FlexibilityNo cancel feeOn-time79%

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