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Kota Kinabalu

$49+ Cheap flights from Manila (MNL) to Kota Kinabalu (BKI)

This is the cheapest one-way flight price found by a Cheapflights user in the last 72 hours by searching for a flight departing on 5/13. Fares are subject to change and may not be available on all flights or dates of travel.
MNL — BKI
Mar 31 — Apr 71
Mon 3/31
Mon 4/7
1 adult, Economy
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Find cheap flights from Manila to Kota Kinabalu with Cheapflights

1. Tell us where you want to go
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Cheapflights Tip: The best prices from Manila Ninoy Aquino Intl to Kota Kinabalu are usually found in November or June, booked 87 days in advance, depart on a Monday or Tuesday and return on a Wednesday

Cheap flight deals from Manila to Kota Kinabalu

Discover tips and strategies to find the most affordable flight options for your journey from Manila (MNL) to Kota Kinabalu (BKI). Learn about various techniques such as flexible date searches, comparing prices across and setting up price alerts. Use these methods to find the cheapest flights available for your travel needs. Data last updated March 26, 2025.

Most accurate provider

FlightHub
3 stars

Most trusted provider

FlightHub
3 stars

Round-trip from

$149
(Mytrip)

One-way from

$49
(Trip.com)

Popular in

January

Cheapest in

November

Average price

$123

Good round-trip deal

$121 or less

Good one-way deal

$58 or less
Provider with most accurate pricing for Manila Ninoy Aquino Intl-Kota Kinabalu flight deals.
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Provider most trusted by Cheapflights users for Manila Ninoy Aquino Intl-Kota Kinabalu flights.
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From Manila Ninoy Aquino Intl to Kota Kinabalu
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One-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu
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Highest demand for flights based on searches. 8% potential increase in price ($10 potential increase over avg. RT price).
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Cheapest flight prices on average. 0% potential price decrease ($2 potential savings vs. average RT price).
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Average for round-trip flights in March 2025
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Price to beat on a round-trip flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Price to beat on a one-way flight from Manila Ninoy Aquino Intl to Kota Kinabalu.
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Find flight deals from Manila to Kota Kinabalu

Cheapest flights from Manila to Kota Kinabalu
Explore the most affordable flight options available from Manila to Kota Kinabalu. Find the lowest fares from popular airlines and budget airlines, with prices last updated on March 26, 2025.

This Mytrip deal was found by Cheapflights users on 3/25. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Mytrip is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Fri 4/2511:10 pmMNL - BKI
Nonstop2h 10mMultiple Airlines
Wed 5/148:25 pmBKI - MNL
1 stop9h 15mMultiple Airlines
Deal found 3/25$149
This FlightHub deal was found by Cheapflights users on 3/25. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure FlightHub is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/811:10 pmMNL - BKI
Nonstop2h 10mPhilippines AirAsia
Sun 10/121:45 amBKI - MNL
Nonstop2h 10mPhilippines AirAsia
Deal found 3/25$172
This Booking.com deal was found by Cheapflights users on 3/25. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Booking.com is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Sat 5/37:35 pmMNL - BKI
1 stop15h 40mScoot
Tue 5/1312:15 pmBKI - MNL
1 stop17h 25mScoot
Deal found 3/25$234
This oojo deal was found by Cheapflights users on 3/25. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure oojo is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/87:40 amMNL - BKI
1 stop11h 45mSingapore Airlines
Mon 10/138:25 pmBKI - MNL
1 stop21h 00mSingapore Airlines
Deal found 3/25$257
This Jeju Air deal was found by Cheapflights users on 3/25. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure Jeju Air is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 5/1411:20 pmMNL - BKI
1 stop24h 10mJeju Air
Sat 5/1712:30 amBKI - MNL
1 stop21h 50mJeju Air
Deal found 3/25$439
This oojo deal was found by Cheapflights users on 3/25. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure oojo is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Wed 10/86:50 amMNL - BKI
1 stop7h 25mMalaysia Airlines
Mon 10/1312:50 pmBKI - MNL
2 stops23h 10mMalaysia Airlines
Deal found 3/25$558
This oojo deal was found by Cheapflights users on 3/25. Clicking the “Pick Dates” button in this card will allow you to select your dates and further customize your flight criteria. From there, click “Find deals”, make sure oojo is selected, and click “Compare selected” under the list of providers to see comparable flight deals.
Thu 4/243:55 amMNL - BKI
1 stop20h 35mChina Eastern
Tue 5/131:30 amBKI - MNL
1 stop23h 50mChina Eastern
Deal found 3/25$647

Cheapflights Fare Finder

Customize your flight search to find flights from Manila to Kota Kinabalu that fit within your specific budget. Explore options based on user searches and filter the results based on your desired price range. Find flights that match your budget for a cost-effective journey. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated March 26, 2025.
Use the filters below to find and compare flights from Manila to Kota Kinabalu that are best for you.

Fly from

Manila

Fly to

Kota Kinabalu

Route

Depart

Return

Price

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Fri 4/25

11:10 pm-1:20 am

Nonstop2h 10m

Kota Kinabalu

Wed 5/14

8:25 pm-5:40 am

1 stop9h 15m

$149

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Sat 5/3

7:35 pm-11:15 am

1 stop15h 40m

Kota Kinabalu

Tue 5/13

12:15 pm-5:40 am

1 stop17h 25m

$234

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Wed 5/14

11:20 pm-11:30 pm

1 stop24h 10m

Kota Kinabalu

Sat 5/17

12:30 am-10:20 pm

1 stop21h 50m

$439

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Mon 4/14

12:50 pm-7:55 pm

2 stops31h 05m

Kota Kinabalu

Sun 4/20

10:20 pm-12:00 pm

1 stop13h 40m

$585

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Thu 4/24

3:55 am-12:30 am

1 stop20h 35m

Kota Kinabalu

Tue 5/13

1:30 am-1:20 am

1 stop23h 50m

$647

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 5/13

8:35 pm-10:45 pm

Nonstop2h 10m

$49

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 5/13

7:35 pm-7:25 pm

1 stop23h 50m

$100

ManilaKota Kinabalu

MNL - BKI

MNLBKI

Manila Ninoy Aquino Intl

Tue 5/13

6:55 am-10:15 pm

2 stops15h 20m

$107

Flights are sorted by cheapest round-trip flights first.

Deals found on 3/25

Compare providers for flights from Manila to Kota Kinabalu

Provider information is updated monthly. Please note that these providers often have deals for this flight, but the availability may vary on a day-by-day basis on Cheapflights.
Use the table below to compare price accuracy, trust ratings, and cancellation policies for each provider offering flight deals from Manila to Kota Kinabalu in March.
ProviderPrice AccuracyTrust Score*
eDreamsPrice Accuracy3 starsTrust Score*3 stars
FlightHubPrice Accuracy3 starsTrust Score*3 stars
Justfly.comPrice Accuracy3 starsTrust Score*3 stars
Trip.comPrice Accuracy1 starTrust Score*3 stars
MytripPrice Accuracy3 starsTrust Score*3 stars
OneTravelPrice Accuracy2 starsTrust Score*3 stars
FlightnetworkPrice Accuracy-Trust Score*3 stars

*The Trust Score is based on feedback from users after their booking experience. It measures overall satisfaction, helping us identify issues like hidden fees, problems during the ticketing process, and the quality of customer service. This score is our best indicator of the provider's quality and reliability.

  • Most accurate provider: When it comes to deals on Manila-Kota Kinabalu flights, users find the pricing of FlightHub to be most consistent on Cheapflights vs. FlightHub Users can find the same prices on Manila-Kota Kinabalu flight deals on Cheapflights vs. FlightHub >95% of the time. Price accuracy is based on data collected from Manila-Kota Kinabalu flight searches over the past month and is updated monthly.
  • Most trusted provider: When it comes to deals on Manila-Kota Kinabalu flights, Cheapflights users trust FlightHub the most. FlightHub has received a user feedback score of 3 out of 3 stars (3 being the best), meaning they have been trusted the most by Cheapflights users looking for Manila-Kota Kinabalu flight deals. Provider user feedback score is based on Cheapflights searches over the past month and is updated monthly.

Best time to book a flight from Manila to Kota Kinabalu

Have a flexible travel schedule? Discover the best time to fly to Kota Kinabalu from Manila with our price prediction graph.
Estimated round-trip price
Rates are based on past data. Find the cheapest month and day to book your flight based on your travel requirements, then search for cheap deals.

Cheapflights Insights

Everything you need to know about your flight from Manila to Kota Kinabalu

How far ahead should I book a flight from Manila to Kota Kinabalu?

Use this chart to determine the optimal time to book a round-trip flight from Manila to Kota Kinabalu. Price data was last updated on March 21, 2025.

The best time to book flights from Manila to Kota Kinabalu is 21 days before your desired departure date. The cost of your flight will likely increase significantly if you book two weeks in advance of your flight.

What is the cheapest time of day to fly from MNL to BKI?

Find hourly flight availability from Manila to Kota Kinabalu. Discover flight options and departure times throughout the day, allowing you to choose a departure time that suits your schedule. Data last updated March 26, 2025.

It’s optimal to fly from Manila to Kota Kinabalu in the morning. By choosing this option you can save up to 3% on the cost of your flight, compared to a flight at noon.

Rainfall in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average rainfall totals by month.

In terms of precipitation, rainfall in Kota Kinabalu ranges from 2.4 - 13.8 inches per month. October is typically the wettest month, when rainfall can reach 13.8 in. February is typically the driest time to visit Kota Kinabalu when rainfall is around 2.4 in.

Temperature in Kota Kinabalu by month

Plan your trip to Kota Kinabalu by taking into account the average temperature totals by month.

If weather is an important factor for your trip to Kota Kinabalu, use this chart to help with planning. For those seeking warmer temperatures, April is the ideal time of year to visit, when temperatures reach an average of 80.6 F. Travelers looking to avoid the cold should look outside of January, when temperatures are typically at their lowest (around 78.8 F).

Reviews of airlines servicing Kota Kinabalu

Get insights into the airlines that provide service to Kota Kinabalu. Read reviews, discover amenities, and learn about the overall travel experience offered by airlines. Use this information to make informed decisions when choosing an airline for your flight to Kota Kinabalu. Reviews last updated March 26, 2025.
Malaysia Airlines
7.3
Good
251 reviews

Overall

7.3

Boarding

7.6

Comfort

7.5

Entertainment

6.7

Food

7.0

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Malaysia Airlines
7.3
Good
251 reviews
Malaysia Airlines
7.3
Good
251 reviews

Overall

7.3

Boarding

7.6

Comfort

7.5

Entertainment

6.7

Food

7.0

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
China Eastern
7.1
Good
135 reviews
Malaysia Airlines
7.3
Good
251 reviews

Overall

7.3

Boarding

7.6

Comfort

7.5

Entertainment

6.7

Food

7.0

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Philippines AirAsia
6.7
Okay
111 reviews
Malaysia Airlines
7.3
Good
251 reviews

Overall

7.3

Boarding

7.6

Comfort

7.5

Entertainment

6.7

Food

7.0

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.
Scoot
6.7
Okay
302 reviews
Malaysia Airlines
7.3
Good
251 reviews

Overall

7.3

Boarding

7.6

Comfort

7.5

Entertainment

6.7

Food

7.0

Crew

8.1

Reviews

1 / 20
8.0
Excellent

Anjan,Nov 2024

SYD - KUL

I have a good experience and got good hospitality from cabin crew thank you.

Related info for your journey

Find useful and relevant information for your journey from Manila to Kota Kinabalu. Access travel guides, tips, and recommendations to enhance your travel experience. Get information about local attractions, weather, transportation options, and more.

  • How popular is this Manila to Kota Kinabalu flight route?

    This flight path from Manila Ninoy Aquino Intl to Kota Kinabalu was viewed by 5 users in the past month. Keep an eye out for changes in search interest prior to high and low season.

  • What are the cheapest airlines flying from Manila to Kota Kinabalu round-trip?

    Our cheapest airline available from Manila to Kota Kinabalu is Scoot. Our recent data shows that you can find tickets from as low as $234 on this airline. Additional options worth looking into are Jeju Air and Malaysia Airlines, starting at $439 and $585 round-trip.

  • What are the cheapest flights from Manila to Kota Kinabalu?

    On average you can expect to pay $90 for a flight from Manila to Kota Kinabalu. The cheapest flight overall is $34 while the most popular route, (Manila Ninoy Aquino Intl - Kota Kinabalu) is currently priced at $216.

  • Can I find deals for flights from Manila to Kota Kinabalu that include hotel bookings?

    Yes. In addition to deals on Manila to Kota Kinabalu flights, Cheapflights offers vacation packages that include both flights and hotel.

  • How can I find direct flights from Manila to Kota Kinabalu?

    After entering your origin and destination, apply the non-stop filter on the search result page to find direct flights from Manila to Kota Kinabalu.

  • Can I find deals for business class flights from Manila to Kota Kinabalu?

    Yes. Cheapflights offers flight deals from Manila to Kota Kinabalu by cabin class. In addition to browsing deals, you can also filter by cabin class on the search results page after making a search.

See more FAQs

Browse thousands of different options on Cheapflights for your next trip

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Complete your trip

Complete your trip to Kota Kinabalu by adding a car rental and/or hotel reservation to your travel itinerary.
Kota Kinabalu car rentals
Kota Kinabalu Airport car rentals

Top airline flying from Manila to Kota Kinabalu

Discover the top airline that operate flights from Manila to Kota Kinabalu. Compare their services, reliability, and customer satisfaction ratings to choose the airline that best suits your travel preferences and needs. Over the last 7 days, Cheapflights users made 2,558,603 searches. Data last updated March 26, 2025.
AirlineCheapestAverageFlexibilityOn-time
Philippines AirAsiaCheapest$88Average$128FlexibilityNo cancel feeOn-time53%
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